Lab Head: Dr. Anuraj Nayarisseri
Principal Scientist & Director, Eminent Biosciences
Board Editorial Member in Nature Scientific Report
Contact: anuraj@eminentbio.com
Publication
2024
Kaur, M., Singh, V., Khan, A., Sharma, K., Junior, F. J. B. M., & Anuraj Nayarisseri. (2025). Navigating the genomic landscape: A deep dive into clinical genetics with deep learning. In Deep Learning in Genetics and Genomics. Academic Press.Elsevier. (pp. 185-224). 
Bandaru S, Sagurthi R S, Khan A, Sharma K, Chaudhary R, Anuraj Nayarisseri , (2024). In vitro evaluation of promiscuity and toxicity of a small molecule targeting wild and T164I β2-adrenergic receptors,
Bioorganic Chemistry, Elsevier, 107990.
Kaur, M., Sharma, S., Anuraj Nayarisseri., Choudhary, R., & Bhat, R. A. (2024). Nanobiostimulants: Precision Tools for Harnessing Soil Microbes and Elevating Agricultural Productivity. In Nanobiostimulants: Emerging Strategies for Agricultural Sustainability . Nanobiostimulants. Cham: Springer Nature Switzerland. pp. 135-163.
Tankoua, W.L.D., Nkwengoua, E.Z.T., Desiré, S., Ndogo Eteme, O., Tchana Satchet, E.M., de Araujo, R.S.A., Anuraj Nayarisseri, de Lima, M.D.C.A., de Aquino, T.M., Barthélémy, N. and Mendonça-Junior, F.J., (2024). Spectroscopic exploration of mode of binding of ct DNA and BSA with acridone alkaloids isolated from Zanthoxylum leprieurii (Rutaceae). Natural Product Research, 1-15.
Anuraj Nayarisseri, Abdalla, M., Joshi, I., Yadav, M., Bhrdwaj, A., Chopra, I.,Khan, A., Saxena, A., Sharma, K., Panicker, A. & Singh, S. K. (2024). Potential inhibitors of VEGFR1, VEGFR2, and VEGFR3 developed through Deep Learning for the treatment of Cervical Cancer. Nature Journal. Scientific Reports, 14(1), 13251.
Anuraj Nayarisseri, Bandaru, S., Khan, A., Sharma, K., Bhrdwaj, A., Kaur, M., Ghosh, D., Chopra, I., Panicker, A., Kumar, A. and Saravanan, P., 2024. & Singh, S. K. (2024). Epigenetic dysregulation in cancers by isocitrate dehydrogenase 2 (IDH2). Advances in Protein Chemistry and Structural Biology. Elsevier. 19 May 2024.
2023
Sharma, K., Panwar, U., Madhavi, M., Joshi, I., Chopra, I., Soni, L., Khan, A., Bhrdwaj, A., Parihar, A.S., Mohan, V.P. Prajapati, L. Sharma, R., Agrawal, S., Hussain, T., Anuraj Nayarisseri & Singh, S. K. (2023). Unveiling the ESR1 Conformational Stability and Screening Potent Inhibitors for Breast Cancer Treatment. Medicinal Chemistry. Oct 27. doi: 10.2174/0115734064256978231024062937.
Maia, M.d.S.; Mendonça-Junior, F.J.B.; Rodrigues, G.C.S.; Silva, A.S.d.; Oliveira, N.I.P.d.; Silva, P.R.d.; Felipe, C.F.B.; Gurgel, A.P.A.D.; Anuraj Nayarisseri.; Scotti, M.T.; et al. (2023). Virtual Screening of Different Subclasses of Lignans with Anticancer Potential and Based on Genetic Profile. Molecules, MDPI, 11;28(16):6011.
Anuraj Nayarisseri., Sanjeev Kumar Singh. (2023).Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis. Plos One. (2023). https://doi.org/10.1371/journal.pone.0285994
Bhrdwaj, A., Abdalla, M., Pande, A., Abdalla, M., Madhavi, M., Chopra, I., Soni, L., Vijayakumar, N., Panwar, U., Khan, M.A., Prajapati, L.,Gujrati, D., Belapurkar. P., Albogami. S., Hussain. T., Selvaraj. C., Anuraj Nayarisseri., Sanjeev Kumar Singh. (2023). Structure-Based Virtual Screening, Molecular Docking, Molecular Dynamics Simulation of EGFR for the Clinical Treatment of Glioblastoma. Appl Biochem Biotechnol. Springer Nature. (2023). https://doi.org/10.1007/s12010-023-04430-z
Sharma, B., Tiwari, S., Bisht, S., Bhrdwaj, A.,Anuraj Nayarisseri, & Tewari, L. (2023). Coupling effect of ionophore and oxidoreductases produced by halotolerant novel fungal strain Trametes flavida WTFP2 on dye wastewater treatment: An optimized green bioprocess. Journal of Environmental Chemical Engineering, 109629.
Anuraj Nayarisseri, Anushka Bhrdwaj, Arshiya Khan, Khushboo Sharma, Uzma Shaheen, Chandrabose Selvaraj, Mohammad Aqueel Khan, Rajaram Abhirami, Muthuraja Arun Pravin, Gurunathan Rubha Shri, Dhanjay Raje, Sanjeev Kumar Singh. (2023). Promoter - Motif Extraction from Co-regulated Genes and their relevance to Co-expression using E.coli as a model. Briefings in Functional Genomics. Oxford Journal. Oxford University Press. elac043.
Isha Joshi, Anushka Bhrdwaj, Aditi Pande, Anshika Agarwal, Chillamcherla Dhanalakshmi Srija, Manju Mohan, Lima Hazarika, Garima Thakur, Tajamul Hussain, Sarah Albogami, Anuraj Nayarisseri and Sanjeev Kumar Singh. (2022). Artificial intelligence, Big data and Machine Learning approaches in Genome-wide SNP-based Prediction for Precision Medicine and Drug Discovery. Big Data Analytics in Chemoinformatics and Bioinformatics. Elsevier. January 19, 2023.
2022
Chandrabose Selvaraj, Muthuraja Arun Pravin, Wardah A.Alhoqail, Anuraj Nayarisseri, Sanjeev KumarSingh(2022). Intrinsically disordered proteins in viral pathogenesis and infections. Advances in Protein Chemistry and Structural Biology. Elsevier. August 2022. https://doi.org/10.1016/bs.apcsb.2022.06.002
Yadav, M., Abdalla, M., Madhavi, M., Chopra, I., Bhrdwaj, A., Soni, L., Shaheen, U., Prajapati, L., Sharma, M., Sikarwar, M.S., Albogami, S., Hussain, T., Anuraj Nayarisseri and Sanjeev Kumar Singh (2022). Structure-Based Virtual Screening, Molecular Docking, Molecular Dynamics Simulation and Pharmacokinetic modelling of Cyclooxygenase-2 (COX-2) inhibitor for the clinical treatment of Colorectal Cancer. Molecular Simulation, 1-21.
V. Natchimuthu, Mohnad Abdalla, Manasi Yadav, Ishita Chopra, Anushka Bhrdwaj, Khushboo Sharma, S. Ravi, Krishnan Ravikumar, Khalid J. Alzahrani, Tajamul Hussain,Anuraj Nayarisseri .(2022). Synthesis, crystal structure, hirshfeld surface analysis, molecular docking and molecular dynamics studies of novel olanzapinium 2,5-dihydroxybenzoate as potential and active antipsychotic compound. Journal of Experimental Nanoscience. 17(1):247–273.
Mukherjee, S., Abdalla, M., Yadav, M., Madhavi, M., Khandelwal, R., Prajapati, L., Panicker, A., Chaudhary, A., Albrakati, A., Hussain, T., Anuraj Nayarisseri and Sanjeev Kumar Singh (2022). Structure-Based Virtual Screening, Molecular Docking, and Molecular Dynamics Simulation of VEGF inhibitors for the clinical treatment of Ovarian Cancer. Journal of Molecular Modeling. 24;28(4):100.
2021
Ritu Adhikary; Ravina Khandelwal; Tajamul Hussain; Anuraj Nayarisseri; Sanjeev Kumar Singh. (2021). Structural Insights into the Molecular Design of ROS1 inhibitor for the treatment of Non-Small Cell Lung Cancer (NSCLC). Current Computer-Aided Drug Design.17(3):387-401.
Mendonça-Junior, F.J.B., Scotti, M.T., Muratov, E.N., Scotti, L. and Anuraj Nayarisseri, (2021). Natural Bioactive Products with Antioxidant Properties Useful in Neurodegenerative Diseases 2020 . Oxidative Medicine and Cellular Longevity. 2021.10;2021:6262316.
Anuraj Nayarisseri, Ravina Khandelwal, Poonam Tanwar, Maddala Madhavi, Diksha Sharma, Garima Thakur, Alejandro Speck-Planche, Sanjeev Kumar Singh (2021). Artificial Intelligence, Big data and Machine Learning approaches in Precision Medicine & Drug Discovery. Current Drug Targets. 22(6):631-655.
Shahrukh Qureshi, Ravina Khandelwal, Maddala Madhavi, Naveesha Khurana, Neha Gupta, Saurav Kumar Choudhary, Revathy Arya Suresh, Lima Hazarika, Chillamcherla Dhanalakshmi Srija, Khushboo Sharma, Mali Ram Hindala, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh (2021). A Multi-Target Drug Designing for BTK, MMP9, Proteasome And TAK1 for the clinical treatment of Mantle Cell Lymphoma. Current Topics in Medicinal Chemistry. 2021;21(9):790-818.
2020
Leena Prajapati; Ravina Khandelwal; Kadapakkam Nandabalan Yogalakshmi; Anjana Munshi; Anuraj Nayarisseri; (2020). Computer-aided Structure prediction of Bluetongue Virus coat protein VP2 assisted by Optimized Potential for Liquid Simulations(OPLS). Current Topics in Medicinal Chemistry. 2020. Vol 20 (19). 1716 -1728.
Anuraj Nayarisseri; Ravina Khandelwal; Sanjeev Kumar Singh (2020).Identification and Characterization of Lipopeptide Biosurfactant Producing Microbacterium sp Isolated from Brackish River Water . Current Topics in Medicinal Chemistry. 20(24):2221-2234.
Anuraj Nayarisseri; (2020). Experimental and Computational Approaches for the Binding Affinity in Chemical Biology and Drug Discovery. Current Topics in Medicinal Chemistry. 2020. Vol 20 (19). 1651 - 1656.
Anuraj Nayarisseri, Khandelwal R, Madhavi M, Selvaraj C, Panwar U, Sharma K, Hussain T, Singh SK ; (2020). Shape-based Machine Learning Models for the potential Novel COVID-19 protease inhibitors assisted by Molecular Dynamics Simulation. Current Topics in Medicinal Chemistry.20(24):2146-2167.
V V Kleandrova, M T Scotti, L Scotti, Anuraj Nayarisseri, A Speck-Planche; (2020). Cell-based multi-target QSAR model for design of virtual versatile inhibitors of liver cancer cell lines. SAR and QSAR in Environmental Research. 31(11):815-836.
Anuraj Nayarisseri, (2020). Most Promising Compounds for Treating COVID-19 and Recent Trends in Antimicrobial & Antifungal Agents. Current Topics in Medicinal Chemistry. 2020. 20(24).2119-2125.
2019
Akanksha Limaye; Jajoriya Sweta; Maddala Madhavi; Urvy Mudgal; Sourav Mukherjee; Shreshtha Sharma; Tajamul Hussain; Anuraj Nayarisseri; Sanjeev Kumar Singh. (2019). In Silico Insights on GD2: A Potential Target for Pediatric Neuroblastoma.Current topics in medicinal chemistry .19(30).2766 - 2781.
Mohini Yadav; Ravina Khandelwal; Urvy Mudgal; Sivaraj Srinitha; Natasha Khandekar; Anuraj Nayarisseri; Sugunakar Vuree; Sanjeev Kumar Singh. (2019). Identification of Potent VEGF Inhibitors for the Clinical Treatment of Glioblastoma, A Virtual Screening Approach. Asian Pacific Journal of Cancer Prevention. 20(9).2681-2692.
Francisco J. B. Mendonça-Junior, Marcus T. Scotti, Anuraj Nayarisseri,Ernestine N. T. Zondegoumba and Luciana Scotti. (2019). Natural Bioactive Products with Antioxidant Properties Useful in Neurodegenerative Diseases. Oxidative Medicine and Cellular Longevity. 2019 May 9;2019:7151780.
Anuraj Nayarisseri (2019). Prospects of Utilizing Computational Techniques for the Treatment of Human Diseases..Current Topics in Medicinal Chemistry. 19(13):1071-1074.
Saphy Sharda, Ravina Khandelwal, Ritu Adhikary, Diksha Sharma, Manisha Majhi, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2019). A Computer - Aided Drug Designing for Pharmacological inhibition of ALK inhibitors induces apoptosis and differentiation in Non-small cell lung cancer . Current Topics in Medicinal Chemistry. 19(13):1129-1144.
Jajoriya Sweta, Ravina Khandelwal, Sivaraj Srinitha, Rashi Pancholi, Ritu Adhikary, Meer Asif Ali, Anuraj Nayarisseri, Sugunakar Vuree, Sanjeev Kumar Singh (2019). Identification of High-Affinity Small Molecule Targeting IDH2 for the Clinical Treatment of Acute Myeloid Leukemia. Asian Pacific Journal of Cancer Prevention. 20(8):2287-2297.
Meer Asif Ali, Sugunakar Vuree, Himshikha Goud, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2019).Identification of High-affinity Small Molecules Targeting Gamma Secretase for the Treatment of Alzheimer’s Disease. Current Topics in Medicinal Chemistry. 19(13):1173-1187.
Abhishek Aher, Trishang Udhwani, Ravina Khandelwal, Aakanksha Limaye, Tajamul Hussain, Anuraj Nayarisseri and Sanjeev Kumar Singh (2019). In silico insights on IL-6: A Potential target for Multicentric Castleman Disease .Current Computer-Aided Drug Design.
Khushboo Patidar, Umesh Panwar, Sugunakar Vuree, Jajoriya Sweta Manpreet Kaur Sandhu, Anuraj Nayarisseri, Sanjeev Kumar Singh (2019). An In silico Approach to Identify High Affinity Small Molecule Targeting m-TOR Inhibitors for the Clinical Treatment of Breast Cancer. Asian Pacific Journal of Cancer Prevention. 20(4):1229-1241.
Anuraj Nayarisseri, Sanjeev Kumar Singh (2019). Functional Inhibition of VEGF and EGFR Suppressors in Cancer Treatment. Current Topics in Medicinal Chemistry. 19(3):178-179.
Alex France M. Monteiro, Jéssika De O. Viana, Anuraj Nayarisseri, Ernestine N. Zondegoumba, Francisco Jaime B. Mendonça Junior, Marcus Tullius Scotti, and Luciana Scotti (2019). Computational Studies Applied to Flavonoids against Alzheimer's and Parkinson's Diseases. Oxidative Medicine and Cellular Longevity.30;2018:7912765.
Trishang Udhwani, Sourav Mukherjee, Khushboo Sharma, Jajoriya Sweta, Natasha Khandekar, Anuraj Nayarisseri, Sanjeev Kumar Singh (2019).Design of PD-L1 inhibitors for lung cancer. Bioinformation. 15(2), 139-150.
Palak Shukla, Ravina Khandelwal, Diksha Sharma, Anindya Dhar, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2019). Virtual Screening of IL-6 Inhibitors for Idiopathic Arthritis. Bioinformation. 15(2), 121-130.
Divya Jain, Trishang Udhwani Shreshtha Sharma, Aishwarya Gandhe, Palugulla Bhaskar Reddy, Anuraj Nayarisseri, Sanjeev Kumar Singh (2019). Design of novel JAK3 Inhibitors towards Rheumatoid Arthritis using molecular docking analysis. Bioinformation. 15(2), 68-78.
Padmini Gokhale, Aashish Pratap Singh Chauhan, Anushka Arora, Natasha Khandekar, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2019). FLT3 inhibitor design using molecular docking based virtual screening for acute myeloid leukemia.Bioinformation. 15(2), 104-115.
2018
Anuraj Nayarisseri, Elizabeth Anne Hood. (2018). Advancement in Microbial Cheminformatics. Current Topics in Medicinal Chemistry. 18(29):2459-2461.
Kritika Sinha, Manisha Majhi, Garima Thakur, Khushboo Patidar, Jajoriya Sweta, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2018). Computer-aided Drug Designing for the Identification of High-Affinity Small Molecule Targeting CD20 for the Clinical Treatment of Chronic Lymphocytic Leukemia (CLL). Current Topics in Medicinal Chemistry. 18(29):2527-2542.
Ravina Khandelwal, Aashish Pratap Singh Chauhan, Swarnima Bilawat, Aishwarya Gandhe, Tajamul Hussain, Elizabeth Anne Hood, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2018). Structure-based Virtual Screening for the Identification of High-affinity Small Molecule Towards STAT3 for the Clinical Treatment of Osteosarcoma. Current Topics in Medicinal Chemistry. 18(29):2511-2526.
Khushboo Sharma, Khushboo Patidar, Meer Asif Ali, Pravin Patil, Himshikha Goud, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2018). Structure-Based Virtual Screening for the Identification of High Affinity Compounds as Potent VEGFR2 Inhibitors for the Treatment of Renal Cell Carcinoma. Current Topics in Medicinal Chemistry. 18(25):2174-2185.
Manisha Majhi, Meer Asif Ali, Akanksha Limaye, Kritika Sinha, Praveena Bairagi, Megha Chouksey, Ruchi Shukla, Nisha Kanwar, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2018). An In Silico Investigation of Potential EGFR Inhibitors for the Clinical Treatment of Colorectal Cancer. Current Topics in Medicinal Chemistry. 18(27):2355-2366.
Anuraj Nayarisseri, Poonam Singh, Sanjeev Kumar Singh. (2018). Screening, isolation and characterization of biosurfactant-producing Bacillus tequilensis strain ANSKLAB04 from brackish river water . Int. J. Environ. Sci. Technol. Springer Nature. 16, pages 7103–7112
Anuraj Nayarisseri, Poonam Singh, and Sanjeev Kumar Singh (2018). Screening, isolation and characterization of biosurfactant producing Bacillus subtilis strain ANSKLAB03 . Bioinformation. 14(6), 304.
Manju Mohan, Shireen Kozhithodi, Anuraj Nayarisseri, and Kothanam Kuzhiyil Elyas (2018). Screening, Purification and Characterization of Protease Inhibitor from Capsicum frutescens. Bioinformation. 14(6):285-293.
Shainy Nhattuketty Krishnan, Anuraj Nayarisseri, and Usha Rajamanickam (2018). Biodegradation effects of o-cresol by Pseudomonas monteilii SHY on mustard seed germination. Bioinformation. 14(6):271-278.
2017
Srinivas Bandaru, Mallika Alvala, Anuraj Nayarisseri,Saphy Sharda, Himshikha Goud, Hema Prasad Mundluru, Sanjeev Kumar Singh. (2017). Molecular dynamic simulations reveal suboptimal binding of salbutamol in T164I variant of β2 adrenergic receptor. PLoS One. 2017; 12(10): e0186666.
Khader Shameer, Anuraj Nayarisseri, Francisco Xavier Romero Duran and Humberto Gonzalez-Diaz. (2017). Improving Neuropharmacology using Big Data, Machine Learning and Computational Algorithms. Current Neuropharmacology. 15(8) 1058 - 1061.
Saphy Sharda, Palash Sarmandal, Kiran Dindhoria, Manisha Yadav, Srinivas Bandaru, Anudeep Sharma, Aditi Sakhi, Tanmay Vyas, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh(2017). A Virtual Screening approach for the Identification of High affinity small molecules targeting BCR-ABL1 inhibitors for the treatment of Chronic Myeloid Leukemia. Current topics in medicinal chemistry. 17(26):2989-2996.
Srinivas Bandaru, Tharaparambil Gangadharan Sumithnath, Saphy Sharda, Anudeep Sharma, Amrita Jain, Tajamul Hussain, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2017). Helix-coil transition signatures BRAF V600E mutation and virtual screening for inhibitors directed against mutant BRAF. Current drug metabolism. 8(6):527-534.
Sahila Mohammed Marunnan, Babitha Pallikkara Pulikkal, Anitha Jabamalairaj, Srinivas Bandaru, Mukesh Yadav, Anuraj Nayarisseri, Victor Arokia Doss (2017). Development of MLR and SVM aided QSAR models to identify common SAR of GABA uptake herbal inhibitors used in the treatment of Schizophrenia . Current Neuropharmacology. 15(8). 1085 - 1092.
Babitha Pallikkara Pulikkal, Sahila Mohammed Marunnan, Srinivas Bandaru, Mukesh Yadav, Anuraj Nayarisseri, Sivanpillai Sureshkumar (2017) .Common SAR derived from linear and non-linear QSAR studies on AChE inhibitors used in the treatment of Alzheimer's disease. Current Neuropharmacology. Pubmed id: 27964704.15(8).1093 - 1099.
2016
Srinivas Bandarua, Pramod Tarigopula, Jyothy Akka, Vijaya Kumar Marri, Ramesh Kumar Kattamuri, Anuraj Nayarisseri, Madhavi Mangalarapu, Swetha Vinukonda, Hema Prasad Mundluru, Someswar Rao Sagurthi (2016). Association of Beta 2 adrenergic receptor (Thr164Ile) polymorphism with Salbutamol refractoriness in severe asthmatics from Indian population. Gene. 592(1), 15-22.
Subhash C Basak, Anuraj Nayarisseri, Humberto González-Díaz, Danail Bonchev (2016) Editorial (Thematic Issue: Chemoinformatics Models for Pharmaceutical Design, Part 2). Current Pharmaceutical Design. 22(34):5177-5178.
Humberto González-Díaz, Anuraj Nayarisseri, Danail Bonchev, Subhash C Basak (2016) Editorial (Thematic Issue: Chemoinformatics Models for Pharmaceutical Design, Part 1). Current Pharmaceutical Design. 22(33):5041-5042.
Natasha Khandekar, Snehal Singh, Ruchi Shukla, Sridevi Tirumalaraju, Srinivas Bandaru, Tushar Banerjee, Anuraj Nayarisseri (2016). Structural basis for the in vitro known acyl-depsipeptide 2 (ADEP2) inhibition to Clp 2 protease from Mycobacterium tuberculosis. Bioinformation 12(3): 92-97.
Kavisha Patidar, Aruna Deshmukh, Srinivas Bandaru, Chandana Lakkaraju, Amandeep Girdhar, Gutlapalli VR, Tushar Banerjee, Anuraj Nayarisseri, Sanjeev Kumar Singh. (2015). Virtual Screening Approaches in Identification of Bioactive Compounds Akin to Delphinidin as Potential HER2 Inhibitors for the Treatment of Breast Cancer. Asian Pacific journal of cancer prevention: APJCP. 17(4), 2291-2295.
Praseetha, S., Bandaru, S., Yadav, M., Anuraj Nayarisseri, & Sureshkumar, S. (2016). Common SAR Derived from Multiple QSAR Models on Vorinostat Derivatives Targeting HDACs in Tumor Treatment. Current pharmaceutical design. 22(33):5072-5078.
Natchimuthu, V., Srinivas Bandarub, Anuraj Nayarisseri, & Ravi, S. (2016). Design, synthesis and computational evaluation of a novel intermediate salt of N-cyclohexyl-N-(cyclohexylcarbamoyl)-4-(trifluoromethyl) benzamide as potential potassium channel blocker in epileptic paroxysmal seizures. Computational biology and chemistry, 64, 64-73.
Praseetha, S., Bandaru, S., Anuraj Nayarisseri, & Sureshkumar, S. (2016). Pharmacological Analysis of Vorinostat Analogues as Potential Anti-tumor Agents Targeting Human Histone Deacetylases: an Epigenetic Treatment Stratagem for Cancers. Asian Pacific journal of cancer prevention: APJCP, 17(3), 1571- 1576.
Bandaru, S., Alvala, M., Akka, J., Sagurthi, S. R., Anuraj Nayarisseri, Sanjeev Kumar Singh., & Mundluru, H. P. (2016). Identification of Small Molecule as a High Affinity β2 Agonist Irrespectively Targeting Wild and Mutated (Thr164Ile) β 2 Adrenergic Receptor in the Treatment of Bronchial Asthma . Current pharmaceutical design. 22(34):5221-5233.
2015
Anuraj Nayarisseri, Mukesh Yadav (2015) Thematic Issue: Mechanistics in Drug Design - Experimental Molecular Biology vs. Molecular Modeling. Current Topics in Medicinal Chemistry.15:(1).3-4.
Venkata Ravi Gutlapalli, Aparna Sykam, Anuraj Nayarisseri, Sujai Suneetha, Lavanya M Suneetha (2015) Insights from the predicted epitope similarity between Mycobacterium tuberculosis virulent factors and its human homologs. Bioinformation 11: 12. 517–524.
Suresh Gudala, Uzma Khan, Niteesh Kanungo, Srinivas Bandaru, Tajamul Hussain, M S Parihar, Anuraj Nayarisseri, Hema Prasad Mundluru (2015). Identification and Pharmacological Analysis of High Efficacy Small Molecule Inhibitors of EGF-EGFR Interactions in Clinical Treatment of Non-Small Cell Lung Carcinoma: a Computational Approach. Asian Pacific Journal of Cancer Prevention 16: 18. 8191-96.
Anuroopa G Nadh, Uday Raj Akare, Priya Sharma, Pratibha Yadav, Srinivas Bandaru, Anuraj Nayarisseri, Achuthsankar S Nair. (2015). Identification of Azo Dye Degrading Sphingomonas Strain EMBS022 and EMBS023 Using 16S rRNA Gene Sequencing". Current Bioinformatics. 10(5), 599-605.
Nageswara Rao Dunna, Venkatesh Kandula, Amandeep Girdhar, Amareshwari Pudutha, Tajamul Hussain, Srinivas Bandaru, Anuraj Nayarisseri (2015) High Affinity Pharmacological Profiling of Dual Inhibitors Targeting RET and VEGFR2 in Inhibition of Kinase and Angiogeneis Events in Medullary Thyroid Carcinoma. Asian Pacific journal of cancer prevention.10(5),599-605.
Harshpreet Chandok, Pratik Shah, Uday Raj Akare, Maliram Hindala, Sneha Singh Bhadoriya, G V Ravi, Varsha Sharma, Srinivas Bandaru, Pragya Rathore, Anuraj Nayarisseri (2015) Screening, Isolation and Identification of Probiotic Producing Lactobacillus acidophilus Strains EMBS081 & EMBS082 by 16S rRNA Gene Sequencing . Interdisciplinary Sciences: Computational Life Sciences. 7(3),242-248.
Babitha P P, Sahila M M, Srinivas Bandaru, Anuraj Nayarisseri, Sureshkumar S (2015) Molecular Docking and Pharmacological Investigations of Rivastigmine-Fluoxetine and Coumarin–Tacrine hybrids against Acetyl Choline Esterase. Bioinformation 11(8),378-386.
Anuraj Nayarisseri, Anjana Suppahia, Anuroopa G Nadh, Achuthsankar S Nair (2015) Identification and Characterization of a Pesticide Degrading Flavobacterium Species EMBS0145 by 16S rRNA Gene Sequencing. Interdisciplinary Sciences: Computational Life Sciences 7(2),93-99.
Wishard R, Jaiswal M, Parveda M, Amareshwari P, Bhadoriya SS, Rathore P, Yadav M, Anuraj Nayarisseri, Nair AS. (2015) Erratum to: Identification and characterization of alkaline protease producing bacillus firmus species EMBS023 by 16S rRNA gene sequencing. Interdisciplinary Sciences: Computational Life Sciences. 7(1):82.
Arash Boroumand Nasr, Deepika Ponnala, Someshwar Rao Sagurthi, Ramesh Kumar Kattamuri, Vijaya Kumar Marri, Suresh Gudala, Chandana Lakkaraju, Srinivas Bandaru, Anuraj Nayarisseri (2015) Molecular Docking studies of FKBP12-mTOR inhibitors using binding predictions. Bioinformation 11(6),307-315.
Sahila M M , Babitha P P, Srinivas Bandaru, Anuraj Nayarisseri , Doss V A(2015) Molecular docking based screening of GABA (A) receptor inhibitors from plant derivatives. Bioinformation.11(6),280-289.
Srinivas Bandaru, Deepika Ponnala, Chandana Lakkaraju, Chaitanya Kumar Bhukya, Uzma Shaheen, Anuraj Nayarisseri (2015) Identification of High-Affinity Non-Peptidic Small Molecule Inhibitors of MDM2-p53 Interactions through Structure-Based Virtual Screening Strategies. Asian Pacific journal of cancer prevention. 16(9):3759-3765.
Uzma Shaheen, Jyothy Akka, Jitendra Singh Hinore, Amandeep Girdhar, Srinivas Bandaru, Tharaparambil Gangadharan Sumithnath, Anuraj Nayarisseri, Anjana Munshi (2015) Computer aided identification of sodium channel blockers in the clinical treatment of epilepsy using molecular docking tools. Bioinformation. 2015; 11(3): 131–137.
R V Vidhya, Achuthsankar S Nair, Pawan K Dhar, Anuraj Nayarisseri (2015) Epitope characterization and docking studies on Chikungunya viral Envelope 2 protein . International Journal of Scientific and Research Publications, 5(2).1-9
P Amareshwari, Mayuri Bhatia, K Venkatesh, A Roja Rani, G V Ravi, Priyanka Bhakt, Srinivas Bandaru, Mukesh Yadav, Anuraj Nayarisseri, Achuthsankar S Nair (2015) Isolation and characterization of a novel chlorpyrifos degrading flavobacterium species EMBS0145 by 16S rRNA gene sequencing. Interdisciplinary Sciences: Computational Life Sciences.7(1), 1 - 6.
Srinivas Bandaru, Geet Tiwari, Jyothy Akka, Vijaya Kumar Marri, Mallika Alvala, Venkata Ravi Gutlapalli, Anuraj Nayarisseri, Hema Prasad Mundluru (2015). Identification of High Affinity Bioactive Salbutamol Conformer Directed Against Mutated (Thr164Ile) Beta 2 Adrenergic Receptor. Current Topics in Medicinal Chemistry 15: 1. 50 - 56.
Chanda Sinha, Anuradha Nischal, Srinivas Bandaru, Priyadarshani Kasera, Ashish Rajput, Anuraj Nayarisseri, Sanjay Khattri (2015) An In silico Approach for Identification of Novel Inhibitors as a Potential Therapeutics Targeting HIV-1 Viral Infectivity Factor. Current Topics in Medicinal Chemistry 15: 1. 65 - 72.
Nageswara Rao Dunna, Srinivas Bandaru, Uday Raj Akare, Siddheshwar Rajadhyax, Venkata Ravi Gutlapalli, Mukesh Yadav,Anuraj Nayarisseri (2015) Multiclass Comparative Virtual Screening to Identify Novel Hsp90 Inhibitors: A Therapeutic Breast Cancer Drug Target. Current Topics in Medicinal Chemistry 15: 1. 57 - 64.
2014
Seema Kelotra, Meeta Jain, Ankit Kelotra, Ish Jain, Srinivas Bandaru, Anuraj Nayarisseri , Anil Bidwai (2014) An In silico Appraisal to Identify High-Affinity Anti-Apoptotic Synthetic Tetrapeptide Inhibitors Targeting the Mammalian Caspase 3 Enzyme. Asian Pacific Journal of Cancer Prevention. 15(23):10137-10142.
Rohan Wishard, Mahak Jaiswal, Maheshwari Parveda, P Amareshwari, Sneha Singh Bhadoriya, Pragya Rathore, Mukesh Yadav, Anuraj Nayarisseri , Achuthsankar S Nair (2014) Identification and characterization of alkaline protease producing Bacillus firmus species EMBS023 by 16S rRNA gene sequencing. Interdisciplinary Sciences: Computational Life Sciences 6: 4. 271-278.
Anuraj Nayarisseri, Rakesh Kumar Shardiwal, Mukesh Yadav, Neha Kanungo, Pooja Singh, Pratik Shah, Sheaza Ahmed .(2014) .PDB explorer — A web-based algorithm for protein annotation viewer and 3D visualization. Interdisciplinary Sciences Computational Life Sciences 6:(4). 279-284.
Ankit Kelotra, Sadashiv M Gokhale, Seema Kelotra, Vaidehi Mukadam, Komal Nagwanshi, Srinivas Bandaru,Anuraj Nayarisseri, Anil Bidwai (2014) Alkyloxy carbonyl modified hexapeptides as a high-affinity compound for Wnt5A protein in the treatment of psoriasis. Bioinformation 10: 12. 739- 745.
Uday Raj Akare, Srinivas Bandaru, Uzma Shaheen, Pramod Kumar Singh, Geet Tiwari, Paramanand Singare, Anuraj Nayarisseri , Tushar Banerjee (2014) Molecular docking approaches in identification of high-affinity inhibitors of human SMO receptor. Bioinformation 10: 12. 733-738.
Srinivas Bandaru, Vijaya Kumar Marri, Priyadarshani Kasera, Purnima Kovuri, Amandeep Girdhar, Deepti Raj Mittal, Sabeen Ikram, G V Ravi, Anuraj Nayarisseri (2014) Structure-based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation 10(10): 652-657 10: 10. 652-657.
Chanda Sinha, Anuradha Nischal, Kamlesh K Pant, Srinivas Bandaru, Anuraj Nayarisseri , Sanjay Khattri (2014) Molecular docking analysis of RN18 and VEC5 in A3G-Vif inhibition. Bioinformation 10(10): 611-616 10: 10. 611-616.
Mayuri Bhatia, Amandeep Girdhar, Archana Tiwari, Anuraj Nayarisseri (2014) Implications of a novel Pseudomonas species on low density polyethylene biodegradation: an in vitro to in silico approach. SpringerPlus 2014, 3:497 3: 497-507.
Asra Tabassum, Tadigadapa Rajeshwari, Nidhi Soni, D S B Raju, Mukesh Yadav, Anuraj Nayarisseri , Parveen Jahan (2014) Structural characterization and mutational assessment of podocin - A novel drug target to nephrotic syndrome - An in silico approach. Interdisciplinary Sciences: Computational Life Sciences. 6(1), 32-39.
2013
Anuraj Nayarisseri, Mukesh Yadav, Rohan Wishard (2013) Computational evaluation of new homologous down regulators of translationally controlled tumor protein (TCTP) targeted for tumor reversion. Interdisciplinary Sciences: Computational Life Sciences. 5(4).274-279.
Bina Chandrakar, Aditya Jain, Suparna Roy, Venkata Ravi Gutlapalli, Shantanu Saraf, Anjana Suppahia, Ankit Verma, Archana Tiwari, Mukesh Yadav, Anuraj Nayarisseri (2013) Molecular modeling of Acetyl-CoA carboxylase (ACC) from Jatropha curcas and virtual screening for identification of inhibitors. Journal of Pharmacy Research.6(9). 913-918.
Anuraj Nayarisseri, Mukesh Yadav, Mayuri Bhatia, Ankita Pandey, Arundhati Elkunchwar, Naman Paul, Deepika Sharma, Gulshan Kumar (2013) Impact of Next-Generation Whole-Exome sequencing in molecular diagnostics. Drug Invention Today. Volume 5(4).327–334.
Acharya Nagarjun Pyde, P Nagaraja Rao, Aditya Jain, Divya Soni, Shailesh Saket, Sheaza Ahmed, Sugunakar Vuree, Anuraj Nayarisseri. (2013) Identification and characterizatation of food borne pathogen Listeria monocytogenes strain Pyde1 and Pyde2 using 16S rRNA gene sequencing. Journal of Pharmacy Research, Elsevier Publishers 6(7). 736-741.
Sugunakar Vuree, Nageswara Rao Dunna, Imran Ali Khan, Khalid K Alharbi, Satti Vishnupriya, Divya Soni, Pratik Shah, Harshpreet Chandok, Mukesh Yadav, Anuraj Nayarisseri (2013) Pharmacogenomics of drug resistance in Breast Cancer Resistance Protein (BCRP) and its mutated variants. Journal of Pharmacy Research, Elsevier Publishers 6(7).791-798.
Srinivas Bandaru, M Hema Prasad, A Jyothy, Anuraj Nayarisseri, Mukesh Yadav (2013) Binding Modes and Pharmacophoric Features of Muscarinic Antagonism and β2 Agonism (MABA) Conjugates. Current topics in medicinal chemistry 13: 14. 1650-1655.
Kirti Khuntwal, Mukesh Yadav, Anuraj Nayarisseri, Shobha Joshi, Deepika Sharma, Smita Suhane (2013) Credential Role of van der Waal Volumes and Atomic Masses in Modeling Hepatitis C Virus NS5B Polymerase Inhibition by Tetrahydrobenzo - Thiophenes Using SVM and MLR Aided QSAR Studies. Current Bioinformatics. 8(4). 65-471.
K Venkatesh, D Lajwanti, Sandhya P Kiran, D V Raje, Anuraj Nayarisseri (2013) Differentially expressed genes in tumors of prostate cancer in American patients with European and African origin. Journal of Pharmacy Research. 6(5), 583-588.
Nandini Phanse, Pragya Rathore, Bhavesh Patel, Anuraj Nayarisseri (2013) Characterization of an industrially important alkalophilic bacterium, Bacillus agaradhaerens strain nandiniphanse5 . Journal of Pharmacy Research Volume 6, Issue 5, May 2013, Pages 543–550 6: 5. 543-550.
Mukesh Yadav, Shobha Joshi, Anuraj Nayarisseri, Anuja Jain, Aabid Hussain, Tushar Dubey (2013) Global QSAR modeling of LogP values of phenethylamines acting as adrenergic alpha- 1 receptor agonists. Interdisciplinary Sciences: Computational Life Sciences. 2013, Volume 5, Issue 2, pp 150-1
M A Rasheed, Anuraj Nayarisseri, Mukesh Yadav, Aditya Jain, Priya Sharma, Suparna Roy, Shailesh Saket (2013) Screening of Bacillus anthracis Plasmid Px01 Proteins to Identify Novel Antigenic Peptides-an Immunoinformatics Approach. European Journal of Biological Sciences. 5: (3). 68-76.
PRASOONA Rebekah, A JYOTI, MUKESH Yadav, NISHANT Sharma, Anuraj Nayarisseri , Joshi SHOBHA (2013) Optimization of Gaussian Kernel Function in Support Vector Machine aided QSAR studies of C-aryl glucoside SGLT2 inhibitors. Interdisciplinary Sciences: Computational Life Sciences 5: 1. 45-52.
Anuraj Nayarisseri, Syed Mustafa Moghni, Mukesh Yadav, Jyotsana Kharate, Priya Sharma, K Harshpreet Chandok, K Pratik Shah (2013) In silico investigations on HSP90 and its inhibition for the therapeutic prevention of breast cancer. Journal of Pharmacy Research. Elsevier. 7(2).150–156.
Pratik Shah, K Harshpreet Chandok, Pragya Rathore, M Varsha Sharma, Mukesh Yadav and Anuraj Nayarisseri (2013) Screening, Isolation and Identification of Polygalacturonase Producing Bacillus tequilensis Strain EMBS083 Using 16S rRNA Gene Sequencing . European Journal of Biological Sciences 51. 09-13.
Neetesh Pandey, Mukesh Yadav, Anuraj Nayarisseri, Meenakshi Ojha, Jyoti Prajapati, Saurabh Gupta (2013) Cross evaluation of different classes of alpha-adrenergic receptor antagonists to identify overlapping pharmacophoric requirements . Journal of Pharmacy Research, Elsevier Publishers. 6(1).173–178.
Meenakshi Ojha, Mukesh Yadav, Anuraj Nayarisseri, Jyoti Prajapati, Neetesh Pandey, Payal Chatterje (2013) Overlapping structure features selection in linear and non-linear QSAR . Journal of Pharmacy Research, Elsevier Publishers.6(1).183–187.
2012
Anuraj Nayarisseri, K Sabnani Manoj, Mukesh Yadav, Jyotsana Kharate, Deepika Sharma, Rachna Chourasia (2012) Identification And Characterization Of Proteases And Amylases Producing Bacillus Licheniformis Strain Embs026 By 16s Rrna Gene Sequencing. International Journal of Microbiology Research. 4(5).231-235.
Anuraj Nayarisseri, Sheaza Ahmed, Mukesh Yadav, Sneha Singh, A Meer Asif, Mayura Maynal, Urvashi Pisal (2012) Identification And Characterization Of Neutral Protease Producing Paenibacillus Polymyxa Species Embs024 By 16s Rrna Gene Sequencing. International Journal of Microbiology Research.4(5).236-239.
Anuraj Nayarisseri, Mukesh Yadav, Sheaza Ahmed, Rachna Chourasia and Deepti Mittal (2012) Identification Of T-Cell Epitope For Protective Antigen And Lethal Factor Of Bacillus Anthracis - An Immunoinformatics Approach. International Journal of Drug Discovery. 1 (4).137-144.
Shobha Joshi, Mukesh YadavMukesh Yadav, Leena Paradkar, Anuraj Nayarisseri(2012) A QSAR Study on Minimum Inhibitory Concentrations of Some Phenols: Predicting -log MIC Using Topological Indices. OXIDATION COMMUNICATIONS 34(3). 684-693.
Srinivas Bandaru, Sirat Sikka, A Jyothy, M Hema Prasad, Mukesh Yadav, Anuraj Nayarisseri(2012) Human Adenosine Receptor subtypes: In silico structural and functional characterization. Online Journal of Bioinformatics Volume 13(3):432-446.
Nishant Sharma, K R Ethiraj, Mukesh Yadav, Anuraj Nayarisseri , Mona Chaurasiya, Raju Naik Vankudavath, K Rajender Rao (2012) Identification of LOGP Values and Electronegativities As Structural Insights to Model Inhibitory Activity of HIV-1 Capsid Inhibitors - A SVM and MLR Aided QSAR Studies. Current Topics in Medicinal Chemistry 12: 16. 1763-1774.
Anuraj Nayarisseri, K Sabnani Manoj, Mukesh Yadav, Jyotsana Kharate, Deepika Sharma, Rachna Chourasia (2012) Identification And Characterization Of Proteases And Amylases Producing Bacillus Licheniformis Strain Embs026 By 16s Rrna Gene Sequencing. International Journal of Microbiology Research.4(5).231-235.
Anuraj Nayarisseri, Mukesh Yadav, Sheaza Ahmed, Rachna Chourasia And Deepti Mittal (2012) Identification Of T-Cell Epitope For Protective Antigen And Lethal Factor Of Bacillus Anthracis - An Immunoinformatics Approach. International Journal of Drug Discovery 4(1). 137-144.
2011
Mukesh Yadav, Anuraj Nayarisseri, Shobha Joshi, Ankita Gupta, Purva Holkar, Ashish Rajput, Rishabh Jain (2011) A Linear Qsar And Docking Approach To Model Inhibitory Activity Of 2-Arylbenzoxazole Derivatives As Cholesteryl Ester Transfer Protein (Cetp) Inhibitors. International Journal of Drug Discovery.
Anuraj Nayarisseri, Mukesh Yadav, Vini Lokhande, Rajesh Patidar, Mayura Maynal (2011) In silico Gene Characterization and biological annotation of Aspergillus niger CBS 513.88. Nature Preceedings. 3(2).70-78.
Shobha Joshi, Mukesh Yadav, Leena Paradkar,Anuraj Nayarisseri (2011) QSAR Studies on Bacterial Growth by Using Connectivity Type Topological Indices. QSAR investigations in biological systems. OXIDATION COMMUNICATIONS.1(3):640-649.
2010
Monika, D Muralidhara Rao, Anuraj Nayarisseri, M Yadav, N Nageswara Rao, K Venkateswarlu (2010) Model ligand-binding site of 2-Amino-5-chlorophenol 1,6-dioxygenase in Comamonas sp. CNB-1. Online Journal of Bioinformatics 11(2). 302-331.
Anuraj Nayarisseri, Mukesh Yadav, Dowlathabad Muralidhara Rao, Sonam Kukreja, Sheaza Ahmed, Pooja Singh (2010) 3D Structure Development Of Chikungunya Virus And Its Structural Characterization – An In Silico Approach. Nature Preceedings. Doi:10.1038/ Npre.2010.5143.1 3: 1. 2010.5143.1.
Dowlathabad Muralidhara Rao, Anuraj Nayarisseri , Mukesh Yadav, K S Showmy, Disha Patel (2010) Comparative Modeling Of Methylentetrahydrofolate Reductase (MTHFR) Enzyme And Its Mutational Assessment: In Silico Approach. International Journal Of Bioinformatics Research, ISSN: 0975–3087. 2: Issue 1. Pp-05-09.
2009
Kaur, M., Singh, V., Khan, A., Sharma, K., Junior, F. J. B. M., & Anuraj Nayarisseri. (2025). Navigating the genomic landscape: A deep dive into clinical genetics with deep learning. In Deep Learning in Genetics and Genomics. Academic Press.Elsevier. (pp. 185-224).
Bandaru S, Sagurthi R S, Khan A, Sharma K, Chaudhary R, Anuraj Nayarisseri , (2024). In vitro evaluation of promiscuity and toxicity of a small molecule targeting wild and T164I β2-adrenergic receptors,
Bioorganic Chemistry, Elsevier, 107990.
Kaur, M., Sharma, S., Anuraj Nayarisseri., Choudhary, R., & Bhat, R. A. (2024). Nanobiostimulants: Precision Tools for Harnessing Soil Microbes and Elevating Agricultural Productivity. In Nanobiostimulants: Emerging Strategies for Agricultural Sustainability . Nanobiostimulants. Cham: Springer Nature Switzerland. pp. 135-163.
Tankoua, W.L.D., Nkwengoua, E.Z.T., Desiré, S., Ndogo Eteme, O., Tchana Satchet, E.M., de Araujo, R.S.A., Anuraj Nayarisseri, de Lima, M.D.C.A., de Aquino, T.M., Barthélémy, N. and Mendonça-Junior, F.J., (2024). Spectroscopic exploration of mode of binding of ct DNA and BSA with acridone alkaloids isolated from Zanthoxylum leprieurii (Rutaceae). Natural Product Research, 1-15.
Anuraj Nayarisseri, Abdalla, M., Joshi, I., Yadav, M., Bhrdwaj, A., Chopra, I.,Khan, A., Saxena, A., Sharma, K., Panicker, A. & Singh, S. K. (2024). Potential inhibitors of VEGFR1, VEGFR2, and VEGFR3 developed through Deep Learning for the treatment of Cervical Cancer. Nature Journal. Scientific Reports, 14(1), 13251.
Anuraj Nayarisseri, Bandaru, S., Khan, A., Sharma, K., Bhrdwaj, A., Kaur, M., Ghosh, D., Chopra, I., Panicker, A., Kumar, A. and Saravanan, P., 2024. & Singh, S. K. (2024). Epigenetic dysregulation in cancers by isocitrate dehydrogenase 2 (IDH2). Advances in Protein Chemistry and Structural Biology. Elsevier. 19 May 2024.